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Phylogenetic and ion-response analyses reveal a relationship between gene expansion and functional divergence in the Ca2+/cation antiporter family in Angiosperms
Ca2+/cation antiporters superfamily (CaCAs) Phylogenetic analyses Selective expansion Expression divergence Ion-response pattern Functional divergence
2023/12/18
Plants and animals face different environmental stresses but share conserved Ca2+ signaling pathways, such as Ca2+/Cation transport. The Ca2+/cation antiporters superfamily (CaCAs) is an ancient and w...
Genome-wide analyses of PAM-relaxed Cas9 genome editors reveal substantial off-target effects by ABE8e in rice
AM-relaxed Cas9 nucleases cytosine base editor adenine base editor off-target effect whole-genome sequencing genome editing rice
2023/7/20
PAM-relaxed Cas9 nucleases, cytosine base editors and adenine base editors are promising tools for precise genome editing in plants. However, their genome-wide off-target effects are largely unexplore...
Nitrogen-Regulated Theanine and Flavonoid Biosynthesis in Tea Plant Roots: Protein-Level Regulation Revealed by Multiomics Analyses
茶氨酸 黄酮类化合物 原花青素 茶树
2023/4/19
Theanine and flavonoids (especially proanthocyanidins) are the most important and abundant secondary metabolites synthesized in the roots of tea plants. Nitrogen promotes theanine and represses flavon...
Transcriptome and QTL analyses reveal candidate genes for fiber quality in Upland cotton
棉花 纤维发育 QTL 转录组 表达基因
2024/5/17
本研究基于前期得到的1个F2群体、1个重组自交系群体和2个永久回交群体得到了15个在多群体或者多年分稳定检测的QTL位点。基于转录组测序，在两亲本间发育10天的纤维进行差异基因鉴定，得到了780个差异基因。通过对QTL和转录组结果联合分析，在9个QTL区间内得到31个基因，其中有9个在纤维中优异表达的基因。在这9个基因中，有7个基因在纤维伸长期高量表达，2个基因在纤维次生壁加厚期高量表达。该研究为...
Genomic analyses reveal the genetic basis of early maturity and identification of loci and candidate genes in upland cotton (Gossypium hirsutum L.)
陆地棉 全基因组 重测序方法 SNP变异图谱
2024/5/17
本研究利用收集的436份国内外变异广泛的陆地棉材料，采用全基因组重测序方法，构建了群体的SNP变异图谱，通过对包含136份早熟棉资源在内的356份陆地棉材料进行深度重测序，并结合公共数据库中的80份陆地棉材料共获得了10,118,884个高质量的SNPs。利用全基因组关联分析（GWAS）鉴定到控制陆地棉早熟性的307个显著遗传位点和重要调控基因。两个早熟遗传热点区域位于 D03和A05&...
Inheritance and quantitative trait loci analyses of the anthocyanins and catechins of Camellia sinensis cultivar ‘Ziyan’ with dark-purple leaves
Inheritance quantitative trait loci analyse anthocyanins catechins Camellia sinensis Ziyan dark-purple leaves
2024/7/30
Owing to the potential health benefifits, anthocyanin-rich teas (Camellia sinensis) have attracted interest over the past decade. Previously, we devel oped the cultivar ‘Ziyan,’ which has dark-purple ...
Physiological and genome-wide gene expression analyses of cold-induced leaf rolling at the seedling stage in rice (Oryza sativa L.)☆
Rice (Oryza sativa L.) Cold-induced leaf yellowing Cold-induced leaf rolling Physiological analysis
2023/4/21
Leaf rolling and discoloration are two chilling-injury symptoms that are widely used as indicators for the evaluation of cold tolerance at the seedling stage in rice. However, the difference in cold-r...
中国地质大学科学技术发展院夏宇轩(博士研究生), 蔡建超*等, 地空学院 Journal of Hydrology, 2019, Fractal dimension, lacunarity and succolarity analyses on CT images of reservoir rocks for permeability prediction
储层岩石；复杂；微观结构；定量；表征；渗透率；建模领域
2021/10/20
近日，中国地质大学地空学院蔡建超教授团队在国际著名地学期刊Journal of Hydrology上发表了储层岩石复杂微观结构定量表征及渗透率建模领域的研究成果：“Fractal dimension, lacunarity and succolarity analyses on CT images of reservoir rocks for permeability prediction”。该文...
Transcriptome -wide modulation combined with morpho-physiological analyses of Typha orientalis roots in response to lead challenge
Pb stress RNA sequencing RT-qPCR ToLR1 Transcriptomics Typha orientalis
2023/8/9
Lead (Pb) is a common pollutant in many environments, including in the soil, water, and/or air. Typha orientalis Presl, a large emergent aquatic plant, has been reported to function as a Pb-tolerant a...
SPATIAL STATISTICAL ANALYSES TO ASSESS THE SPATIAL EXTENT AND CONCENTRATION OF MULTIDIMENSIONAL POVERTY IN GAUTENG USING THE SOUTH AFRICAN MULTIDIMENSIONAL POVERTY INDEX
Multidimensional Poverty SAMPI Spatial Autocorrelation Global Moran’s I LISA
2018/11/8
Assessment of poverty has generally been carried out using “money-metric” measures. But since poverty is multidimensional, these measures fall short of generating a comprehensive picture of the poor. ...
UTILIZATION OF LARGE SCALE SURFACE MODELS FOR DETAILED VISIBILITY ANALYSES
analysis of visibility unmanned air vehicle 3d point cloud extended viewshed viewshed
2018/3/5
This article demonstrates utilization of large scale surface models with small spatial resolution and high accuracy, acquired from Unmanned Aerial Vehicle scanning, for visibility analyses. The import...
The analyses focusing on formation mechanism of Nanzhangzhuang ground fissure in Hengshui City, China
Ground fissure Mechanism analysis Intersection faults Deep ground water Landform and lithology
2018/3/23
The paper focuses on the formation of Nanzhangzhuang ground fissure through emphatically analysing factors including the intersection fault dislocation, the deep ground-water over-exploitation togethe...
THE 4DILAN PROJECT (4TH DIMENSION IN LANDSCAPE AND ARTIFACTS ANALYSES)
3D modelling UAV photogrammetry GPR (Ground Penetrating Radar) TLS (Terrestrial laser scanning) archive documents knowledge for conservation project
2017/6/20
The project is part of the wider application and subsequent spread of innovative digital technologies involving robotic systems. Modern society needs knowledge and investigation of the environment and...
Computational Method Makes Gene Expression Analyses More Accurate
Computational Method Gene Expression Analyses More Accurate
2017/3/14
A new computational method can improve the accuracy of gene expression analyses, which are increasingly used to diagnose and monitor cancers and are a major tool for basic biological research.Research...
concerto: A Methodology Towards Reproducible Analyses of TLS Datasets
SSL/TLS reproducible analysis
2017/2/20
Over the years, SSL/TLS has become an essential part of Internet security. As such, it should offer robust and state-of-the-art security, in particular for HTTPS, its first application. Theoretically,...